SELECTED PUBLICATIONS

Than NG, Romero R, Erez O, Weckle A, Hotra J, Abbas A, Han YM, Kim S-S, Kusanovic JP, Gotsch F, Hou Z, Santolaya-Forgas J, Benirschke K, Papp Z, Grossman LI, Goodman M, Wildman DE (2008). Emergence of hormonal and redox regulation of galectin-1 in placental mammals – implication in maternal-fetal immune tolerance. Proc. Natl. Acad. Sci. USA 105: 15819-24.

Erez O, Opazo JC, Chen C, Liu G, Montenegro D, Kusanovic JP, Espinoza J, Romero R, Grossman LI, Goodman M, Wildman DE (2008). Increased nonsynonymous nucleotide substitution rate in matrix metalloproteinase genes is associated with the development of interstitial embryonic implantation in mammals. Submitted for publication.

Uddin M, Goodman M, Erez O., Romero R, Liu G, Islam M, Opazo JC, Sherwood CC, Grossman LI, Wildman DE (2008). Distinct genomic signatures of adaptation in pre-and post-natal environments during human evolution. Proc. Natl. Acad. Sci. USA 105, 3215-3220.

Uddin M, Opazo JC, Wildman DE, Sherwood CC, Hof P, Goodman M, Grossman LI (2008). Molecular evolution of the cytochrome c oxidase subunit 5A gene in primates. BMC Evol. Biol. 8:8.

Chen C, Opazo JC, Erez O, Uddin M, Santolaya-Forgas J, Goodman M, Grossman LI, Romero R, Wildman DE (2008). Mammalian progesterone receptors show evidence of adaptive evolution associated with N-terminus transactivation and transrepression function. Mol. Phylogenet Evol. 47, 637-649.

Liu G, Uddin M, Goodman M, Grossman LI, Romero R, Wildman DE (2007). OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences. Source Code for Biology and Medicine 2:5.

Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, Gascuel O, Grossman LI, Romero R, Goodman M (2007). Genomics, biogeography, and the diversification of placental mammals. Proc. Natl. Acad. Sci. USA 104, 14395-14400.

Hüttemann M, Lee I, Liu J, Grossman LI (2007). Transcription of cytochrome c oxidase subunit IV-2 is controlled by a novel conserved oxygen responsive element. FEBS J 274, 5737-5748.

Wildman DE, Chen C, Erez O, Grossman LI, Goodman M, Romero R (2006). Evolution of the mammalian placenta revealed by phylogenetic analysis. Proc. Natl. Acad. Sci. USA 103, 3203-3208.

Lee I, Salomon AR, Yu K, Doan JW, Grossman LI, Hüttemann M (2006). New Prospects for an Old Enzyme: Mammalian Cytochrome c is Tyrosine Phosphorylated in vivo. Biochemistry 45, 9121-9128.

Sherwood CC, Stimpson CD, Raghanti MA, Wildman DE, Uddin M, Grossman LI, Goodman M, Redmond JC, Bonar CJ, Erwin JM, Hof PR (2006). Evolution of Increased Glia-Neuron Ratios in the Human Frontal Cortex. Proc. Natl. Acad. Sci. USA, 103, 13606-13.

Lee I, Salomon AR, Ficarro S, Mathes I, Lottspeich F, Grossman LI, Hüttemann M (2005). cAMP-dependent tyrosine phosphorylation of subunit I inhibits cytochrome c oxidase activity. J. Biol. Chem. 280, 6094-6100.

Goodman M, Grossman LI, Wildman DE (2005). Moving primate genomics beyond the chimpanzee genome. Trends Genet. 21, 511-517.

Schmidt TR, Wildman DE, Uddin M, Opazo J, Goodman M, Grossman LI (2005). Rapid electrostatic evolution at the docking site for cytochrome c on cytochrome c oxidase in anthropoid primates. Proc. Natl. Acad. Sci. USA 102, 6379-6384.

Doan JW, Schmidt TR, Wildman DE, Goodman M, Weiss ML, Grossman LI (2005). Rapid nonsynonymous evolution of the iron sulfur protein in anthropoid primates. J. Bioenerg. Biomembr. 37, 35-41.

Uddin M, Wildman DE, Liu G, Xu W, Johnson RM, Hof P, Kapatos G, Grossman LI, Goodman M (2004). Sister-grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles. Proc. Natl. Acad. Sci. USA 101, 2957-2962.

Doan JW, Schmidt TR, Wildman DE, Uddin M, Goldberg A, Hüttemann M, Goodman M, Weiss ML, Grossman LI (2004). Coevolution of a multiprotein complex: cytochrome c oxidase subunits show accelerated rates of nonsynonymous substitution in anthropoid primates. Mol. Phylogenet Evol. 33, 944-950.

Grossman LI, Wildman DE, Schmidt TR, Goodman M (2004). Accelerated evolution of the electron transport chain in anthropoid primates. Trends Genet. 20, 579-585.

Schmidt TR, Doan JR, Goodman M, Grossman LI (2003). Retention of a duplicate gene through changes of the subcellular localization signal: a cytochrome c oxidase subunit VIIa-related protein localizes to the Golgi apparatus. J. Mol. Evol. 57, 222-228.

Goldberg A, Schmidt TR, Hüttemann M, Wildman D, Weiss M, Goodman M, Grossman LI (2003). Adaptive evolution of cytochrome c oxidase subunit VIII in anthropoid primates. Proc. Natl. Acad. Sci. USA 100, 5873-5878.

Hüttemann M, Jaradat S, Grossman LI (2003). Cytochrome c oxidase of mammals contains a testes-specific isoform of subunit VIb—the counterpart to testes-specific cytochrome c? Molec. Repro. Dev. 66, 8-16.

Hüttemann M, Schmidt TR, Grossman LI (2003). A third isoform of cytochrome c oxidase subunit VIII is present in mammals. Gene 312, 95-102.

Wildman DE, Uddin M, Liu G, Grossman LI, Goodman M (2003). Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo. Proc. Natl. Acad. Sci. USA 100, 7181-7188.

Schmidt TR, Goodman M, Grossman LI (2002). Amino acid replacement is rapid in primates for the mature polypeptides of COX subunits, but not for their targeting presequences. Gene 286, 13-19.

Yu M, Jaradat SA, Grossman LI (2002). Genomic organization and promoter regulation of human cytochrome c oxidase subunit VIIa heart/muscle isoform (COX7AH). Biochim. Biophys. Acta 1574, 345-353.

Wildman DE, Grossman LI, Goodman M (2002). Human and chimpanzee functional DNA shows they are more similar to each other than either is to other apes. In M Goodman and A.S. Moffat, Eds. Probing Human Origins. Cambridge: American Academy of Arts & Sciences Press, pp. 1-10.

Wildman DE, Wu W, Goodman M, Grossman LI (2002). Episodic positive selection in ape cytochrome c oxidase subunit IV. Mol. Biol. Evol. 19, 1812-1815.

Schmidt TR, Wu W, Goodman M, Grossman LI (2001). The evolution of nuclear and mitochondrial encoded subunit interaction in cytochrome c oxidase. Mol. Biol. Evol. 18, 563-569.

Grossman LI, Schmidt TR, Wildman D, Goodman M (2001). Molecular evolution of aerobic energy metabolsim in primates. Mol. Phylogenet Evol. 18, 26-36.

Hüttemann M, Kadenbach B, Grossman LI (2001). Mammalian subunit IV isoforms of cytochrome c oxidase. Gene 267, 111-123.